Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms by Bouhaddou, Mehdi, Rezelj, Veronica V, Ulferts, Svenja, Jureka, Alexander S, Obernier, Kirsten, Guo, Jeffrey Z, Batra, Jyoti, Pourmal, Sergei, Cakir, Merve, McGregor, Michael, Cakir, Zeynep, Zhang, Ziyang, Rojc, Ajda, Kuchenov, Dmitry, Xu, Jiewei, Eckhardt, Manon, Rathore, Ujjwal, Modak, Maya, Haas, Paige, Barrio-Hernandez, Inigo, Marrero, Miguel Correa, Burke, David, Vallet, Thomas, Silvas, Jesus A, Diwanji, Devan, Herrera, Nadia, Smith, Amber M, Sun, Ming, Chen, Jen, Chio, Un Seng, Doan, Loan, Faust, Bryan, Jin, Mingliang, Kim, Kate, Lam, Victor L, Li, Junrui, Li, Yen-Li, Lopez, Kyle E, Moss, 3rd, Frank R, Paulino, Joana, Pospiech, Jr, Thomas H, Thwin, Aye C, Tse, Eric, Tsui, Tsz Kin Martin, Wang, Feng, Whitis, Natalie, Saltzberg, Daniel, Hodder, Anthony J, Shun-Shion, Amber S, Williams, Daniel M, White, Kris M, Rosales, Romel, Kehrer, Thomas, Miorin, Lisa, Moreno, Elena, Rihn, Suzannah, Simoneau, Camille R, Wu, David, Ghoussaini, Maya, Dunham, Ian, Berardi, Francesco, Weigang, Sebastian, Chazal, Maxime, Park, Jisoo, Logue, James, McGrath, Marisa, Weston, Stuart, Haupt, Robert, Elliott, Matthew, Brown, Fiona, Burness, Kerry A, Johnson, Clare, Wilkinson, Stuart G, Geyer, Anna, Baillie, Carla, Raggett, Samantha, Leech, Hannah, Keough, Kathleen C, Klesh, Reyna J, Carlson-Stevermer, Jared, Holden, Kevin, Maures, Travis, Pollard, Katherine S, Sali, Andrej, Cheng, Yifan, Jura, Natalia, Kortemme, Tanja, Manglik, Aashish, Southworth, Daniel R, Alessi, Dario R, Davies, Paul, Ideker, Trey, Abate, Carmen, Kochs, Georg, Shoichet, Brian, Palmarini, Massimo, Basler, Christopher F, Vignuzzi, Marco, Beltrao, Pedro, Krogan, Nevan J

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Comparative genomics reveals insights into avian genome evolution and adaptation by Zhang, Guojie, Li, Cai, Li, Qiye, Li, Bo, Larkin, Denis M., Lee, Chul, Storz, Jay F., Antunes, Agostinho, Greenwold, Matthew J., Meredith, Robert W., Ödeen, Anders, Cui, Jie, Xu, Luohao, Wang, Zongji, Jin, Lijun, Zhang, Pei, Hu, Haofu, Yang, Wei, Hu, Jiang, Xiao, Jin, Yang, Zhikai, Liu, Yang, Xie, Qiaolin, Yu, Hao, Lian, Jinmin, Wen, Ping, Zhang, Fang, Li, Hui, Zeng, Yongli, Xiong, Zijun, Liu, Shiping, Zhou, Long, Huang, Zhiyong, An, Na, Wang, Jie, Zheng, Qiumei, Xiong, Yingqi, Wang, Guangbiao, Wang, Bo, Wang, Jingjing, Fan, Yu, da Fonseca, Rute R., Alfaro-Núñez, Alonzo, Schubert, Mikkel, Orlando, Ludovic, Mourier, Tobias, Howard, Jason T., Ganapathy, Ganeshkumar, Pfenning, Andreas, Whitney, Osceola, Rivas, Miriam V., Hara, Erina, Smith, Julia, Farré, Marta, Narayan, Jitendra, Slavov, Gancho, Romanov, Michael N, Borges, Rui, Machado, João Paulo, Khan, Imran, Springer, Mark S., Gatesy, John, Hoffmann, Federico G., Opazo, Juan C., Sawyer, Roger H., Kim, Heebal, Kim, Kyu-Won, Kim, Hyeon Jeong, Cho, Seoae, Li, Ning, Huang, Yinhua, Bruford, Michael W., Zhan, Xiangjiang, Dixon, Andrew, Bertelsen, Mads F., Derryberry, Elizabeth, Warren, Wesley, Wilson, Richard K, Li, Shengbin, Green, Richard E., Griffin, Darren, Johnson, Warren E., Haussler, David, Ryder, Oliver A., Willerslev, Eske, Graves, Gary R., Alström, Per, Fjeldså, Jon, Mindell, David P., Edwards, Scott V., Rahbek, Carsten, Burt, David W., Houde, Peter, Zhang, Yong, Yang, Huanming, Wang, Jian, Consortium, Avian Genome, Jarvis, Erich D., Gilbert, M. Thomas P., Wang, Jun

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Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs by Green, Richard E., Braun, Edward L., Armstrong, Joel, Earl, Dent, Nguyen, Ngan, Hickey, Glenn, Vandewege, Michael W., St. John, John A., Capella-Gutiérrez, Salvador, Castoe, Todd A., Kern, Colin, Fujita, Matthew K., Opazo, Juan C., Jurka, Jerzy, Kojima, Kenji K., Caballero, Juan, Hubley, Robert M., Smit, Arian F., Platt, Roy N., Lavoie, Christine A., Ramakodi, Meganathan P., Finger, John W., Suh, Alexander, Isberg, Sally R., Miles, Lee, Chong, Amanda Y., Jaratlerdsiri, Weerachai, Gongora, Jaime, Moran, Christopher, Iriarte, Andrés, McCormack, John, Burgess, Shane C., Edwards, Scott V., Lyons, Eric, Williams, Christina, Breen, Matthew, Howard, Jason T., Gresham, Cathy R., Peterson, Daniel G., Schmitz, Jürgen, Pollock, David D., Haussler, David, Triplett, Eric W., Zhang, Guojie, Irie, Naoki, Jarvis, Erich D., Brochu, Christopher A., Schmidt, Carl J., McCarthy, Fiona M., Faircloth, Brant C., Hoffmann, Federico G., Glenn, Travis C., Gabaldón, Toni, Paten, Benedict, Ray, David A.

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Evolutionary constraint and innovation across hundreds of placental mammals by Christmas, Matthew J, Kaplow, Irene M, Genereux, Diane P, Dong, Michael X, Hughes, Graham M, Li, Xue, Sullivan, Patrick F, Hindle, Allyson G, Andrews, Gregory, Armstrong, Joel C, Bianchi, Matteo, Breit, Ana M, Diekhans, Mark, Fanter, Cornelia, Foley, Nicole M, Goodman, Daniel B, Goodman, Linda, Keough, Kathleen C, Kirilenko, Bogdan, Kowalczyk, Amanda, Lawless, Colleen, Lind, Abigail L, Meadows, Jennifer R S, Moreira, Lucas R, Redlich, Ruby W, Ryan, Louise, Swofford, Ross, Valenzuela, Alejandro, Wagner, Franziska, Wallerman, Ola, Brown, Ashley R, Damas, Joana, Fan, Kaili, Gatesy, John, Grimshaw, Jenna, Johnson, Jeremy, Kozyrev, Sergey V, Lawler, Alyssa J, Marinescu, Voichita D, Morrill, Kathleen M, Osmanski, Austin, Paulat, Nicole S, Phan, BaDoi N, Reilly, Steven K, Schäffer, Daniel E, Steiner, Cynthia, Supple, Megan A, Wilder, Aryn P, Wirthlin, Morgan E, Xue, James R, Birren, Bruce W, Gazal, Steven, Hubley, Robert M, Koepfli, Klaus-Peter, Marques-Bonet, Tomas, Meyer, Wynn K, Nweeia, Martin, Sabeti, Pardis C, Shapiro, Beth, Smit, Arian F A, Springer, Mark S, Teeling, Emma C, Weng, Zhiping, Hiller, Michael, Levesque, Danielle L, Lewin, Harris A, Murphy, William J, Navarro, Arcadi, Paten, Benedict, Pollard, Katherine S, Ray, David A, Ruf, Irina, Ryder, Oliver A, Pfenning, Andreas R, Lindblad-Toh, Kerstin, Karlsson, Elinor K

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Integrating gene annotation with orthology inference at scale by Kirilenko, Bogdan M, Munegowda, Chetan, Osipova, Ekaterina, Jebb, David, Sharma, Virag, Blumer, Moritz, Morales, Ariadna E, Ahmed, Alexis-Walid, Kontopoulos, Dimitrios-Georgios, Hilgers, Leon, Lindblad-Toh, Kerstin, Karlsson, Elinor K, Hiller, Michael

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A genomic timescale for placental mammal evolution by Foley, Nicole M, Mason, Victor C, Harris, Andrew J, Bredemeyer, Kevin R, Damas, Joana, Lewin, Harris A, Eizirik, Eduardo, Gatesy, John, Karlsson, Elinor K, Lindblad-Toh, Kerstin, Springer, Mark S, Murphy, William J

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Leveraging base-pair mammalian constraint to understand genetic variation and human disease by Sullivan, Patrick F, Meadows, Jennifer R S, Gazal, Steven, Phan, BaDoi N, Li, Xue, Genereux, Diane P, Dong, Michael X, Bianchi, Matteo, Andrews, Gregory, Sakthikumar, Sharadha, Nordin, Jessika, Roy, Ananya, Christmas, Matthew J, Marinescu, Voichita D, Wang, Chao, Wallerman, Ola, Xue, James, Yao, Shuyang, Sun, Quan, Szatkiewicz, Jin, Wen, Jia, Huckins, Laura M, Lawler, Alyssa, Keough, Kathleen C, Zheng, Zhili, Zeng, Jian, Wray, Naomi R, Li, Yun, Johnson, Jessica, Chen, Jiawen, Paten, Benedict, Reilly, Steven K, Hughes, Graham M, Weng, Zhiping, Pollard, Katherine S, Pfenning, Andreas R, Forsberg-Nilsson, Karin, Karlsson, Elinor K, Lindblad-Toh, Kerstin

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Mammalian evolution of human cis-regulatory elements and transcription factor binding sites by Andrews, Gregory, Fan, Kaili, Pratt, Henry E, Phalke, Nishigandha, Karlsson, Elinor K, Lindblad-Toh, Kerstin, Gazal, Steven, Moore, Jill E, Weng, Zhiping

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The contribution of historical processes to contemporary extinction risk in placental mammals by Wilder, Aryn P, Supple, Megan A, Subramanian, Ayshwarya, Mudide, Anish, Swofford, Ross, Serres-Armero, Aitor, Steiner, Cynthia, Koepfli, Klaus-Peter, Genereux, Diane P, Karlsson, Elinor K, Lindblad-Toh, Kerstin, Marques-Bonet, Tomas, Munoz Fuentes, Violeta, Foley, Kathleen, Meyer, Wynn K, Ryder, Oliver A, Shapiro, Beth

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Insights into mammalian TE diversity through the curation of 248 genome assemblies by Osmanski, Austin B, Paulat, Nicole S, Korstian, Jenny, Grimshaw, Jenna R, Halsey, Michaela, Sullivan, Kevin A M, Moreno-Santillán, Diana D, Crookshanks, Claudia, Roberts, Jacquelyn, Garcia, Carlos, Johnson, Matthew G, Densmore, Llewellyn D, Stevens, Richard D, Rosen, Jeb, Storer, Jessica M, Hubley, Robert, Smit, Arian F A, Dávalos, Liliana M, Karlsson, Elinor K, Lindblad-Toh, Kerstin, Ray, David A

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Three-dimensional genome rewiring in loci with human accelerated regions by Keough, Kathleen C, Whalen, Sean, Inoue, Fumitaka, Przytycki, Pawel F, Fair, Tyler, Deng, Chengyu, Steyert, Marilyn, Ryu, Hane, Lindblad-Toh, Kerstin, Karlsson, Elinor, Nowakowski, Tomasz, Ahituv, Nadav, Pollen, Alex, Pollard, Katherine S

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Relating enhancer genetic variation across mammals to complex phenotypes using machine learning by Kaplow, Irene M, Lawler, Alyssa J, Schäffer, Daniel E, Srinivasan, Chaitanya, Sestili, Heather H, Wirthlin, Morgan E, Phan, BaDoi N, Prasad, Kavya, Brown, Ashley R, Zhang, Xiaomeng, Foley, Kathleen, Genereux, Diane P, Karlsson, Elinor K, Lindblad-Toh, Kerstin, Meyer, Wynn K, Pfenning, Andreas R

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The functional and evolutionary impacts of human-specific deletions in conserved elements by Xue, James R, Mackay-Smith, Ava, Mouri, Kousuke, Garcia, Meilin Fernandez, Dong, Michael X, Akers, Jared F, Noble, Mark, Li, Xue, Lindblad-Toh, Kerstin, Karlsson, Elinor K, Noonan, James P, Capellini, Terence D, Brennand, Kristen J, Tewhey, Ryan, Sabeti, Pardis C, Reilly, Steven K

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Vocal learning-associated convergent evolution in mammalian proteins and regulatory elements by Wirthlin, Morgan E, Schmid, Tobias A, Elie, Julie E, Kowalczyk, Amanda, Redlich, Ruby, Rakuljic, Ashley, Ji, Maria B, Bhat, Ninad S, Kaplow, Irene M, Schäffer, Daniel E, Lawler, Alyssa J, Wang, Andrew Z, Phan, BaDoi N, Annaldasula, Siddharth, Brown, Ashley R, Lu, Tianyu, Azim, Eiman, Meyer, Wynn K, Pond, Sergei L Kosakovsky, Chikina, Maria, Yartsev, Michael M, Pfenning, Andreas R, Andrews, Gregory, Bianchi, Matteo, Bredemeyer, Kevin R, Breit, Ana M, Christmas, Matthew J, Clawson, Hiram, Di Palma, Federica, Dong, Michael X, Fan, Kaili, Fanter, Cornelia, Foley, Nicole M, Forsberg-Nilsson, Karin, Gatesy, John, Gazal, Steven, Genereux, Diane P, Goodman, Linda, Grimshaw, Jenna, Halsey, Michaela K, Hickey, Glenn, Hiller, Michael, Hindle, Allyson G, Hubley, Robert M, Hughes, Graham M, Johnson, Jeremy, Kaplow, Irene M, Keough, Kathleen C, Koepfli, Klaus-Peter, Korstian, Jennifer M, Kowalczyk, Amanda, Lawler, Alyssa J, Lawless, Colleen, Levesque, Danielle L, Lewin, Harris A, Li, Xue, Lind, Abigail, Lindblad-Toh, Kerstin, Mackay-Smith, Ava, Marinescu, Voichita D, Meyer, Wynn K, Moreno-Santillan, Diana D, Morrill, Kathleen M, Muntané, Gerard, Murphy, William J, Navarro, Arcadi, Nweeia, Martin, Ortmann, Sylvia, Osmanski, Austin, Paten, Benedict, Pfenning, Andreas R, Phan, BaDoi N, Pollard, Katherine S, Pratt, Henry E, Ray, David A, Reilly, Steven K, Rosen, Jeb R, Ruf, Irina, Ryan, Louise, Sabeti, Pardis C, Shapiro, Beth, Smit, Arian F A, Springer, Mark, Srinivasan, Chaitanya, Steiner, Cynthia, Sullivan, Patrick F, Sundström, Elisabeth, Supple, Megan A, Swofford, Ross, Teeling, Emma, Turner-Maier, Jason, Valenzuela, Alejandro, Wagner, Franziska, Wallerman, Ola, Wang, Chao, Wang, Juehan, Weng, Zhiping, Wilder, Aryn P, Wirthlin, Morgan E, Xue, James R

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Comparative genomics of Balto, a famous historic dog, captures lost diversity of 1920s sled dogs by Moon, Katherine L, Huson, Heather J, Morrill, Kathleen, Wang, Ming-Shan, Li, Xue, Srikanth, Krishnamoorthy, Lindblad-Toh, Kerstin, Svenson, Gavin J, Karlsson, Elinor K, Shapiro, Beth

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Atomic structure of Hsp90-Cdc37-Cdk4 reveals that Hsp90 traps and stabilizes an unfolded kinase by Verba, Kliment A., Wang, Ray Yu-Ruei, Arakawa, Akihiko, Liu, Yanxin, Shirouzu, Mikako, Yokoyama, Shigeyuki, Agard, David A.

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Russian-English Transliteration: An exchange of views on this problem shows that a universally accepted solution is not yet at hand by Hamp, Eric P., Fabergé, A. C., London, Miriam B., London, Ivan D., Ray, David T., Razran, Gregory

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Structural basis for RNA replication by the hepatitis C virus polymerase by Appleby, Todd C., Perry, Jason K., Murakami, Eisuke, Barauskas, Ona, Feng, Joy, Cho, Aesop, Fox, David, Wetmore, Diana R., McGrath, Mary E., Ray, Adrian S., Sofia, Michael J., Swaminathan, S., Edwards, Thomas E.

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Individual intestinal symbionts induce a distinct population of RORγ+regulatory T cells by Sefik, Esen, Geva-Zatorsky, Naama, Oh, Sungwhan, Konnikova, Liza, Zemmour, David, McGuire, Abigail Manson, Burzyn, Dalia, Ortiz-Lopez, Adriana, Lobera, Mercedes, Yang, Jianfei, Ghosh, Shomir, Earl, Ashlee, Snapper, Scott B., Jupp, Ray, Kasper, Dennis, Mathis, Diane, Benoist, Christophe

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Transcriptome-wide isoform-level dysregulation in ASD, schizophrenia, and bipolar disorder by Gandal, Michael J, Zhang, Pan, Hadjimichael, Evi, Walker, Rebecca L, Chen, Chao, Liu, Shuang, Won, Hyejung, van Bakel, Harm, Varghese, Merina, Wang, Yongjun, Shieh, Annie W, Haney, Jillian, Parhami, Sepideh, Belmont, Judson, Kim, Minsoo, Moran Losada, Patricia, Khan, Zenab, Mleczko, Justyna, Xia, Yan, Dai, Rujia, Wang, Daifeng, Yang, Yucheng T, Xu, Min, Fish, Kenneth, Hof, Patrick R, Warrell, Jonathan, Fitzgerald, Dominic, White, Kevin, Jaffe, Andrew E, Peters, Mette A, Gerstein, Mark, Liu, Chunyu, Iakoucheva, Lilia M, Pinto, Dalila, Geschwind, Daniel H

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