Convergent evolution of gene expression in two high-toothed stickleback populations

by Hart, James C, Ellis, Nicholas A, Eisen, Michael B, Miller, Craig T
Published in PLoS genetics

The human urine metabolome

by Bouatra, Souhaila, Aziat, Farid, Mandal, Rupasri, Guo, An Chi, Wilson, Michael R, Knox, Craig, Bjorndahl, Trent C, Krishnamurthy, Ramanarayan, Saleem, Fozia, Liu, Philip, Dame, Zerihun T, Poelzer, Jenna, Huynh, Jessica, Yallou, Faizath S, Psychogios, Nick, Dong, Edison, Bogumil, Ralf, Roehring, Cornelia, Wishart, David S
Published in PloS one

Genomic and phenotypic characterization of Burkholderia isolates from the potable water system of the International Space Station

by O'Rourke, Aubrie, Lee, Michael D, Nierman, William C, Everroad, R Craig, Dupont, Chris L
Published in PloS one

Precision medicine integrating whole-genome sequencing, comprehensive metabolomics, and advanced imaging

by Hou, Ying-Chen Claire, Yu, Hung-Chun, Martin, Rick, Cirulli, Elizabeth T., Schenker-Ahmed, Natalie M., Hicks, Michael, Cohen, Isaac V., Jönsson, Thomas J., Heister, Robyn, Napier, Lori, Swisher, Christine Leon, Dominguez, Saints, Tang, Haibao, Li, Weizhong, Perkins, Bradley A., Barea, Jaime, Rybak, Christina, Smith, Emily, Duchicela, Keegan, Doney, Michael, Brar, Pamila, Hernandez, Nathaniel, Kirkness, Ewen F., Kahn, Andrew M., Venter, J. Craig, Karow, David S., Caskey, C. Thomas
Published in Proceedings of the National Academy of Sciences - PNAS

Haplotyping the Vitis collinear core genome with rhAmpSeq improves marker transferability in a diverse genus

by Zou, Cheng, Karn, Avinash, Reisch, Bruce, Nguyen, Allen, Sun, Yongming, Bao, Yun, Campbell, Michael S, Church, Deanna, Williams, Stephen, Xu, Xia, Ledbetter, Craig A, Patel, Sagar, Fennell, Anne, Glaubitz, Jeffrey C, Clark, Matthew, Ware, Doreen, Londo, Jason P, Sun, Qi, Cadle-Davidson, Lance
Published in Nature communications

Integrated genomic characterization reveals novel, therapeutically relevant drug targets in FGFR and EGFR pathways in sporadic intrahepatic cholangiocarcinoma

by Borad, Mitesh J, Champion, Mia D, Egan, Jan B, Liang, Winnie S, Fonseca, Rafael, Bryce, Alan H, McCullough, Ann E, Barrett, Michael T, Hunt, Katherine, Patel, Maitray D, Young, Scott W, Collins, Joseph M, Silva, Alvin C, Condjella, Rachel M, Block, Matthew, McWilliams, Robert R, Lazaridis, Konstantinos N, Klee, Eric W, Bible, Keith C, Harris, Pamela, Oliver, Gavin R, Bhavsar, Jaysheel D, Nair, Asha A, Middha, Sumit, Asmann, Yan, Kocher, Jean-Pierre, Schahl, Kimberly, Kipp, Benjamin R, Barr Fritcher, Emily G, Baker, Angela, Aldrich, Jessica, Kurdoglu, Ahmet, Izatt, Tyler, Christoforides, Alexis, Cherni, Irene, Nasser, Sara, Reiman, Rebecca, Phillips, Lori, McDonald, Jackie, Adkins, Jonathan, Mastrian, Stephen D, Placek, Pamela, Watanabe, Aprill T, Lobello, Janine, Han, Haiyong, Von Hoff, Daniel, Craig, David W, Stewart, A Keith, Carpten, John D
Published in PLoS genetics

One-step assembly in yeast of 25 overlapping DNA fragments to form a complete synthetic Mycoplasma genitalium genome

by Gibson, Daniel G, Benders, Gwynedd A, Axelrod, Kevin C, Zaveri, Jayshree, Algire, Mikkel A, Moodie, Monzia, Montague, Michael G, Venter, J. Craig, Smith, Hamilton O, Hutchison, Clyde A. III
Published in Proceedings of the National Academy of Sciences - PNAS

Identification of tissue-specific cell death using methylation patterns of circulating DNA

by Lehmann-Werman, Roni, Neiman, Daniel, Zemmour, Hai, Moss, Joshua, Magenheim, Judith, Vaknin-Dembinsky, Adi, Rubertsson, Sten, Nellgård, Bengt, Blennow, Kaj, Zetterberg, Henrik, Spalding, Kirsty, Haller, Michael J., Wasserfall, Clive H., Schatz, Desmond A., Greenbaum, Carla J., Dorrell, Craig, Grompe, Markus, Zick, Aviad, Hubert, Ayala, Maoz, Myriam, Fendrich, Volker, Bartsch, Detlef K., Golan, Talia, Sasson, Shmuel A. Ben, Zamir, Gideon, Razin, Aharon, Cedar, Howard, Shapiro, A. M. James, Glaser, Benjamin, Shemer, Ruth, Dor, Yuval
Published in Proceedings of the National Academy of Sciences - PNAS

Distinct genomic integration of MLV and SIV vectors in primate hematopoietic stem and progenitor cells

by Hematti, Peiman, Hong, Bum-Kee, Ferguson, Cole, Adler, Rima, Hanawa, Hideki, Sellers, Stephanie, Holt, Ingeborg E, Eckfeldt, Craig E, Sharma, Yugal, Schmidt, Manfred, von Kalle, Christof, Persons, Derek A, Billings, Eric M, Verfaillie, Catherine M, Nienhuis, Arthur W, Wolfsberg, Tyra G, Dunbar, Cynthia E, Calmels, Boris
Published in PLoS biology

Establishing RNAi in a Non-Model Organism: The Antarctic Nematode Panagrolaimus sp. DAW1

by Seybold, Anna C, Wharton, David A, Thorne, Michael A S, Marshall, Craig J
Published in PloS one

A widely employed germ cell marker is an ancient disordered protein with reproductive functions in diverse eukaryotes

by Carmell, Michelle A, Dokshin, Gregoriy A, Skaletsky, Helen, Hu, Yueh-Chiang, van Wolfswinkel, Josien C, Igarashi, Kyomi J, Bellott, Daniel W, Nefedov, Michael, Reddien, Peter W, Enders, George C, Uversky, Vladimir N, Mello, Craig C, Page, David C
Published in eLife

Genome-wide association and Mendelian randomisation analysis provide insights into the pathogenesis of heart failure

by Shah, Sonia, Roselli, Carolina, Lin, Honghuang, Fatemifar, Ghazaleh, Hedman, Åsa K, Morley, Michael P, Verweij, Niek, Dehghan, Abbas, Almgren, Peter, Ärnlöv, Johan, Backman, Joshua D, Biggs, Mary L, Bloom, Heather L, Brown, Michael R, Buckbinder, Leonard, Chasman, Daniel I, Chen, Xing, Chen, Xu, Chung, Jonathan, Chutkow, William, Delgado, Graciela E, Denaxas, Spiros, Dörr, Marcus, Dudley, Samuel C, Dunn, Michael E, Felix, Stephan B, Finan, Chris, Ghanbari, Mohsen, Ghasemi, Sahar, Giedraitis, Vilmantas, Giulianini, Franco, Gottdiener, John S, Gross, Stefan, Guðbjartsson, Daníel F, van der Harst, Pim, Hyde, Craig L, Ingelsson, Erik, Jukema, J Wouter, Khaw, Kay-Tee, Kleber, Marcus E, Køber, Lars, Koekemoer, Andrea, Langenberg, Claudia, Lind, Lars, London, Barry, Lovering, Ruth C, Luan, Jian'an, Magnusson, Patrik, Mahajan, Anubha, Melander, Olle, Mordi, Ify R, Morgan, Thomas, Morris, Andrew D, Morris, Andrew P, Morrison, Alanna C, Nagle, Michael W, Niessner, Alexander, O'Donoghue, Michelle L, Owens, Anjali T, Palmer, Colin N A, Parry, Helen M, Portilla-Fernandez, Eliana, Psaty, Bruce M, Rice, Kenneth M, Ridker, Paul M, Romaine, Simon P R, Salo, Perttu, Salomaa, Veikko, Smith, Nicholas L, Stender, Steen, Stott, David J, Svensson, Per, Taylor, Kent D, Teumer, Alexander, Thorgeirsson, Guðmundur, Thorsteinsdottir, Unnur, Tyl, Benoit, Uitterlinden, Andre G, Veluchamy, Abirami, Völker, Uwe, Voors, Adriaan A, Wang, Xiaosong, Waterworth, Dawn, Weiss, Raul, Wiggins, Kerri L, Xing, Heming, Yerges-Armstrong, Laura M, Yu, Bing, Zannad, Faiez, Zhao, Jing Hua, Hemingway, Harry, Samani, Nilesh J, Malarstig, Anders, Asselbergs, Folkert W, Kuchenbaecker, Karoline, Lang, Chim C, Stefansson, Kari, Smith, J Gustav, Swerdlow, Daniel I, Lumbers, R Thomas
Published in Nature communications

Genome-wide mega-analysis identifies 16 loci and highlights diverse biological mechanisms in the common epilepsies

by Abou-Khalil, Bassel, Auce, Pauls, Bahlo, Melanie, Balding, David J., Bast, Thomas, Becker, Albert J., Berkovic, Samuel F., Boysen, Katja E., Bradfield, Jonathan P., Brody, Lawrence C., Campbell, Ellen, Cascino, Gregory D., Catarino, Claudia B., Cherny, Stacey S., Compston, Alastair, Coppola, Antonietta, Cossette, Patrick, Craig, John J., de Haan, Gerrit-Jan, de Kovel, Carolien G. F., Delanty, Norman, Depondt, Chantal, Devinsky, Orrin, Doherty, Colin P., Elger, Christian E., Eriksson, Johan G., Ferraro, Thomas N., Francis, Ben, Freytag, Saskia, Gaus, Verena, Geller, Eric B., Glauser, Tracy, Goldstein, David B., Gui, Hongsheng, Haas, Kevin F., Hakonarson, Hakon, Hallmann, Kerstin, Helbig, Ingo, Hengsbach, Christian, Hjalgrim, Helle, Iacomino, Michele, Jamnadas-Khoda, Jennifer, Johnson, Michael R., Kasperavičiūte, Dalia, Kasteleijn-Nolst Trenite, Dorothee, Knowlton, Robert C., Kuzniecky, Ruben, Lau, Yu-Lung, Lehesjoki, Anna-Elina, Lerche, Holger, Lieb, Wolfgang, Lindhout, Dick, Lo, Warren D., Lopes-Cendes, Iscia, Lowenstein, Daniel H., Marson, Anthony G., McCormack, Mark, Mills, James L., Mirza, Nasir, Møller, Rikke S., Newton, Mark, Ng, Ping-Wing, Oliver, Karen L., Palotie, Aarno, Peter, Sarah, Petrovski, Slavé, Privitera, Michael, Radtke, Rodney, Reif, Philipp S., Reinthaler, Eva M., Rosenow, Felix, Sander, Josemir W., Sander, Thomas, Scattergood, Theresa, Schankin, Christoph J., Scheffer, Ingrid E., Schmitz, Bettina, Schoch, Susanne, Sills, Graeme J., Sisodiya, Sanjay M., Slattery, Lisa, Smith, David F., Smith, Michael C., Smith, Philip E., Sperling, Michael R., Steinhoff, Bernhard J., Stephani, Ulrich, Striano, Pasquale, Stroink, Hans, Surges, Rainer, Thio, Liu Lin, Todaro, Marian, Vari, Maria S., Visscher, Frank, von Spiczak, Sarah, Walley, Nicole M., Weisenberg, Judith, Yang, Wanling, Zara, Federico, Zimprich, Fritz
Published in Nature communications

Genome-wide characterization of pancreatic adenocarcinoma patients using next generation sequencing

by Liang, Winnie S, Craig, David W, Carpten, John, Borad, Mitesh J, Demeure, Michael J, Weiss, Glen J, Izatt, Tyler, Sinari, Shripad, Christoforides, Alexis, Aldrich, Jessica, Kurdoglu, Ahmet, Barrett, Michael, Phillips, Lori, Benson, Hollie, Tembe, Waibhav, Braggio, Esteban, Kiefer, Jeffrey A, Legendre, Christophe, Posner, Richard, Hostetter, Galen H, Baker, Angela, Egan, Jan B, Han, Haiyong, Lake, Douglas, Stites, Edward C, Ramanathan, Ramesh K, Fonseca, Rafael, Stewart, A Keith, Von Hoff, Daniel
Published in PloS one

A novel human cytomegalovirus locus modulates cell type-specific outcomes of infection

by Umashankar, Mahadevaiah, Petrucelli, Alex, Cicchini, Louis, Caposio, Patrizia, Kreklywich, Craig N, Rak, Michael, Bughio, Farah, Goldman, Devorah C, Hamlin, Kimberly L, Nelson, Jay A, Fleming, William H, Streblow, Daniel N, Goodrum, Felicia
Published in PLoS pathogens

Rearrangement in the Hypervariable Region of JC Polyomavirus Genomes Isolated from Patient Samples and Impact on Transcription Factor-Binding Sites and Disease Outcomes

by Wilczek, Michael P, Pike, Aiden M C, Craig, Sophie E, Maginnis, Melissa S, King, Benjamin L
Published in International journal of molecular sciences

The choline transporter Slc44a2 controls platelet activation and thrombosis by regulating mitochondrial function

by Bennett, J Allen, Mastrangelo, Michael A, Ture, Sara K, Smith, Charles O, Loelius, Shannon G, Berg, Rachel A, Shi, Xu, Burke, Ryan M, Spinelli, Sherry L, Cameron, Scott J, Carey, Thomas E, Brookes, Paul S, Gerszten, Robert E, Sabater-Lleal, Maria, de Vries, Paul S, Huffman, Jennifer E, Smith, Nicholas L, Morrell, Craig N, Lowenstein, Charles J
Published in Nature communications

Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images

by Currant, Hannah, Hysi, Pirro, Fitzgerald, Tomas W, Gharahkhani, Puya, Bonnemaijer, Pieter W M, Senabouth, Anne, Hewitt, Alex W, Atan, Denize, Aung, Tin, Charng, Jason, Choquet, Hélène, Craig, Jamie, Khaw, Peng T, Klaver, Caroline C W, Kubo, Michiaki, Ong, Jue-Sheng, Pasquale, Louis R, Reisman, Charles A, Daniszewski, Maciej, Powell, Joseph E, Pébay, Alice, Simcoe, Mark J, Thiadens, Alberta A H J, van Duijn, Cornelia M, Yazar, Seyhan, Jorgenson, Eric, MacGregor, Stuart, Hammond, Chris J, Mackey, David A, Wiggs, Janey L, Foster, Paul J, Patel, Praveen J, Birney, Ewan, Khawaja, Anthony P
Published in PLoS genetics

Mutation and evolutionary rates in adélie penguins from the antarctic

by Millar, Craig D, Dodd, Andrew, Anderson, Jennifer, Gibb, Gillian C, Ritchie, Peter A, Baroni, Carlo, Woodhams, Michael D, Hendy, Michael D, Lambert, David M
Published in PLoS genetics

Large haploblocks underlie rapid adaptation in the invasive weed Ambrosia artemisiifolia

by Battlay, Paul, Wilson, Jonathan, Bieker, Vanessa C, Lee, Christopher, Prapas, Diana, Petersen, Bent, Craig, Sam, van Boheemen, Lotte, Scalone, Romain, de Silva, Nissanka P, Sharma, Amit, Konstantinović, Bojan, Nurkowski, Kristin A, Rieseberg, Loren H, Connallon, Tim, Martin, Michael D, Hodgins, Kathryn A
Published in Nature communications